3D structure

PDB id
8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUCC*GC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CRE_260 not in the Motif Atlas
Homologous match to IL_8C3A_110
Geometric discrepancy: 0.087
The information below is about IL_8C3A_110
Detailed Annotation
Single stack bend with bulge
Broad Annotation
Single stack bend with bulge
Motif group
IL_39137.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

8CRE|1|AS|G|2742
8CRE|1|AS|U|2743
8CRE|1|AS|C|2744
8CRE|1|AS|C|2745
*
8CRE|1|AS|G|2759
8CRE|1|AS|C|2760

Current chains

Chain AS
25S

Nearby chains

Chain BG
60S ribosomal protein L13
Chain BL
60S ribosomal protein L18-A
Chain BV
60S ribosomal protein L28
Chain CJ
60S ribosomal protein L42-B

Coloring options:


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