3D structure

PDB id
8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UUA*UA
Length
5 nucleotides
Bulged bases
8CRE|1|B|U|438
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CRE_325 not in the Motif Atlas
Homologous match to IL_8P9A_396
Geometric discrepancy: 0.0845
The information below is about IL_8P9A_396
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

8CRE|1|B|U|437
8CRE|1|B|U|438
8CRE|1|B|A|439
*
8CRE|1|B|U|461
8CRE|1|B|A|462

Current chains

Chain B
18S

Nearby chains

Chain G
40S ribosomal protein S4
Chain L
Ribosomal protein S4
Chain a
40S ribosomal protein S24

Coloring options:


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