IL_8CRE_348
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 8CRE|1|B|G|898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CRE_348 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.0762
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
8CRE|1|B|U|878
8CRE|1|B|U|879
8CRE|1|B|G|880
8CRE|1|B|U|881
8CRE|1|B|C|882
8CRE|1|B|A|883
8CRE|1|B|G|884
*
8CRE|1|B|C|895
8CRE|1|B|U|896
8CRE|1|B|U|897
8CRE|1|B|G|898
8CRE|1|B|G|899
8CRE|1|B|A|900
8CRE|1|B|U|901
8CRE|1|B|U|902
8CRE|1|B|U|903
8CRE|1|B|A|904
Current chains
- Chain B
- 18S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 40S ribosomal protein S1
- Chain Q
- 40S ribosomal protein S14-A
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