IL_8CRE_400

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8CRE|1|CM|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8CRE|1|CM|G|141
8CRE|1|CM|G|142
8CRE|1|CM|A|143
8CRE|1|CM|U|144
8CRE|1|CM|A|145
8CRE|1|CM|A|146
8CRE|1|CM|C|147
*
8CRE|1|CM|G|163
8CRE|1|CM|C|164
8CRE|1|CM|U|165
8CRE|1|CM|A|166
8CRE|1|CM|A|167
8CRE|1|CM|U|168
8CRE|1|CM|A|169
8CRE|1|CM|C|170

Current chains

Chain CM

18S

Nearby chains

Chain BR

60S ribosomal protein L24-A

Chain CT

40S ribosomal protein S6

Chain DL

40S ribosomal protein S24