IL_8CRE_418

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86136.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

8CRE|1|CM|G|512
8CRE|1|CM|A|513
8CRE|1|CM|G|514
*
8CRE|1|CM|C|534
8CRE|1|CM|G|535
8CRE|1|CM|A|536
8CRE|1|CM|G|537
8CRE|1|CM|G|538
8CRE|1|CM|A|539
8CRE|1|CM|A|540
8CRE|1|CM|C|541

Current chains

Chain CM

18S

Nearby chains

Chain CW

Ribosomal protein S4

Chain DR

40S ribosomal protein S30