IL_8CRE_423

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

8CRE|1|CM|A|577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8CRE|1|CM|G|560
8CRE|1|CM|U|561
8CRE|1|CM|G|562
8CRE|1|CM|C|563
8CRE|1|CM|C|564
8CRE|1|CM|A|565
8CRE|1|CM|G|566
*
8CRE|1|CM|C|573
8CRE|1|CM|G|574
8CRE|1|CM|G|575
8CRE|1|CM|U|576
8CRE|1|CM|A|577
8CRE|1|CM|A|578
8CRE|1|CM|U|579
8CRE|1|CM|U|580
8CRE|1|CM|C|581

Current chains

Chain CM

18S

Nearby chains

Chain CL

60S ribosomal protein CAALFM_C304810CA

Chain CQ

Ribosomal protein S3

Chain DK

Ribosomal protein S23 (S12)

Chain DR

40S ribosomal protein S30