IL_8CRE_426

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8CRE|1|CM|C|625
8CRE|1|CM|G|626
8CRE|1|CM|U|627
8CRE|1|CM|A|628
8CRE|1|CM|G|629
*
8CRE|1|CM|U|953
8CRE|1|CM|C|954
8CRE|1|CM|A|955
8CRE|1|CM|A|956
8CRE|1|CM|G|957

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain CY

40S ribosomal protein S11A

Chain DA

40S ribosomal protein S13

Chain DJ

40S ribosomal protein S22-A

Chain DK

Ribosomal protein S23 (S12)