IL_8CRE_438

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8CRE|1|CM|C|975
8CRE|1|CM|G|976
8CRE|1|CM|A|977
8CRE|1|CM|A|978
8CRE|1|CM|G|979
*
8CRE|1|CM|C|995
8CRE|1|CM|G|996
8CRE|1|CM|U|997
8CRE|1|CM|A|998
8CRE|1|CM|G|999

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain AW

60S ribosomal protein L2-B

Chain DB

40S ribosomal protein S14-A

Chain DN

40S ribosomal protein S26