IL_8CRE_478

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAG*UCU

Length

6 nucleotides

Bulged bases

8CRE|1|1|C|2476

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CRE_478 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.3533

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8CRE|1|1|G|2426
8CRE|1|1|A|2427
8CRE|1|1|G|2428
*
8CRE|1|1|U|2475
8CRE|1|1|C|2476
8CRE|1|1|U|2477

Current chains

Chain 1

25S

Nearby chains

Chain AJ

60S ribosomal protein L36