IL_8CSQ_016

3D structure

PDB id

8CSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

8CSQ|1|A|A|938

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSQ_016 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1272

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

8CSQ|1|A|C|935
8CSQ|1|A|G|936
8CSQ|1|A|U|937
8CSQ|1|A|A|938
8CSQ|1|A|A|939
8CSQ|1|A|A|940
8CSQ|1|A|G|941
*
8CSQ|1|A|C|1133
8CSQ|1|A|G|1134

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial

Chain N

28S ribosomal protein S17, mitochondrial