IL_8CSQ_020

3D structure

PDB id

8CSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSQ_020 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.196

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

8CSQ|1|A|A|1067
8CSQ|1|A|A|1068
8CSQ|1|A|A|1069
8CSQ|1|A|C|1070
8CSQ|1|A|U|1071
*
8CSQ|1|A|A|1087
8CSQ|1|A|C|1088
8CSQ|1|A|U|1089
8CSQ|1|A|A|1090
8CSQ|1|A|U|1091

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 5

Dimethyladenosine transferase 1, mitochondrial