IL_8CSQ_024

3D structure

PDB id

8CSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UU*AAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSQ_024 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2498

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

8CSQ|1|A|U|1207
8CSQ|1|A|U|1208
*
8CSQ|1|A|A|1356
8CSQ|1|A|A|1357
8CSQ|1|A|A|1358

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 7

Methyltransferase-like protein 17, mitochondrial

Chain 8

Malonyl-CoA-acyl carrier protein transacylase, mitochondrial