IL_8CSQ_032

3D structure

PDB id

8CSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

GUCACCC*GACAAGUC

Length

15 nucleotides

Bulged bases

8CSQ|1|A|C|1494, 8CSQ|1|A|C|1556, 8CSQ|1|A|U|1560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CSQ|1|A|G|1489
8CSQ|1|A|U|1490
8CSQ|1|A|C|1491
8CSQ|1|A|A|1492
8CSQ|1|A|C|1493
8CSQ|1|A|C|1494
8CSQ|1|A|C|1495
*
8CSQ|1|A|G|1554
8CSQ|1|A|A|1555
8CSQ|1|A|C|1556
8CSQ|1|A|A|1557
8CSQ|1|A|A|1558
8CSQ|1|A|G|1559
8CSQ|1|A|U|1560
8CSQ|1|A|C|1561

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 5

Dimethyladenosine transferase 1, mitochondrial

Chain 7

Methyltransferase-like protein 17, mitochondrial

Chain J

28S ribosomal protein S12, mitochondrial