IL_8CSS_024
3D structure
- PDB id
- 8CSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial small subunit assembly intermediate (State D)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- AAC*GCU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CSS_024 not in the Motif Atlas
- Geometric match to IL_1Z7F_002
- Geometric discrepancy: 0.0933
- The information below is about IL_1Z7F_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 259
Unit IDs
8CSS|1|A|A|1109
8CSS|1|A|A|1110
8CSS|1|A|C|1111
*
8CSS|1|A|G|1130
8CSS|1|A|C|1131
8CSS|1|A|U|1132
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain J
- 28S ribosomal protein S12, mitochondrial
- Chain N
- 28S ribosomal protein S17, mitochondrial
- Chain T
- 28S ribosomal protein S25, mitochondrial
Coloring options: