IL_8CSS_026

3D structure

PDB id

8CSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

GCGG*CGU

Length

7 nucleotides

Bulged bases

8CSS|1|A|G|1178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSS_026 not in the Motif Atlas

Geometric match to IL_6IA2_001

Geometric discrepancy: 0.2494

The information below is about IL_6IA2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8CSS|1|A|G|1176
8CSS|1|A|C|1177
8CSS|1|A|G|1178
8CSS|1|A|G|1179
*
8CSS|1|A|C|1475
8CSS|1|A|G|1476
8CSS|1|A|U|1477

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 6

Putative ribosome-binding factor A, mitochondrial

Chain 7

Methyltransferase-like protein 17, mitochondrial

Chain C

28S ribosomal protein S24, mitochondrial