IL_8CSS_042

3D structure

PDB id

8CSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

CAAGU*AUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CSS_042 not in the Motif Atlas

Geometric match to IL_1GID_010

Geometric discrepancy: 0.3127

The information below is about IL_1GID_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77691.4

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

8CSS|1|A|C|1500
8CSS|1|A|A|1501
8CSS|1|A|A|1502
8CSS|1|A|G|1503
8CSS|1|A|U|1504
*
8CSS|1|A|A|1546
8CSS|1|A|U|1547
8CSS|1|A|A|1548
8CSS|1|A|G|1549

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein