IL_8CST_037

3D structure

PDB id

8CST (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial small subunit assembly intermediate (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CST_037 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.209

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8CST|1|A|A|1507
8CST|1|A|C|1508
8CST|1|A|U|1509
8CST|1|A|U|1510
*
8CST|1|A|A|1540
8CST|1|A|U|1541
8CST|1|A|U|1542
8CST|1|A|U|1543

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 0

28S ribosomal protein S34, mitochondrial

Chain 3

Aurora kinase A-interacting protein