IL_8CVJ_057

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVJ_057 not in the Motif Atlas

Geometric match to IL_7RQB_060

Geometric discrepancy: 0.073

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8CVJ|1|1A|A|1469
8CVJ|1|1A|G|1470
8CVJ|1|1A|A|1471
8CVJ|1|1A|A|1472
8CVJ|1|1A|G|1473
*
8CVJ|1|1A|U|1518
8CVJ|1|1A|G|1519
8CVJ|1|1A|G|1520
8CVJ|1|1A|U|1523

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains