IL_8CVJ_104

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

8CVJ|1|1A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVJ_104 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.0404

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8CVJ|1|1A|G|2737
8CVJ|1|1A|A|2738
8CVJ|1|1A|U|2739
8CVJ|1|1A|A|2740
8CVJ|1|1A|A|2741
8CVJ|1|1A|C|2742
*
8CVJ|1|1A|G|2762
8CVJ|1|1A|G|2763
8CVJ|1|1A|A|2764
8CVJ|1|1A|A|2765
8CVJ|1|1A|G|2766
8CVJ|1|1A|C|2767

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13