IL_8CVJ_202

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCUAGGGGG*CUACCAAAC

Length

18 nucleotides

Bulged bases

8CVJ|1|2A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVJ|1|2A|G|875
8CVJ|1|2A|C|876
8CVJ|1|2A|U|877
8CVJ|1|2A|A|878
8CVJ|1|2A|G|879
8CVJ|1|2A|G|880
8CVJ|1|2A|G|881
8CVJ|1|2A|G|882
8CVJ|1|2A|G|883
*
8CVJ|1|2A|C|894
8CVJ|1|2A|U|895
8CVJ|1|2A|A|896
8CVJ|1|2A|C|897
8CVJ|1|2A|C|898
8CVJ|1|2A|A|899
8CVJ|1|2A|A|900
8CVJ|1|2A|A|901
8CVJ|1|2A|C|902

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16

Chain 2Z

50S ribosomal protein L25

Chain 2w

Transfer RNA; tRNA