IL_8CVJ_234

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8CVJ|1|2A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVJ_234 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1292

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8CVJ|1|2A|C|1686
8CVJ|1|2A|G|1687
8CVJ|1|2A|U|1688
8CVJ|1|2A|A|1689
8CVJ|1|2A|A|1690
8CVJ|1|2A|C|1691
*
8CVJ|1|2A|G|1696
8CVJ|1|2A|G|1697
8CVJ|1|2A|A|1698
8CVJ|1|2A|G|1699
8CVJ|1|2A|A|1700
8CVJ|1|2A|A|1701
8CVJ|1|2A|G|1702

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA