IL_8CVJ_310

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGU*ACCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVJ_310 not in the Motif Atlas

Geometric match to IL_3V7E_003

Geometric discrepancy: 0.3398

The information below is about IL_3V7E_003

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8CVJ|1|2a|G|657
8CVJ|1|2a|G|658
8CVJ|1|2a|U|659
*
8CVJ|1|2a|A|746
8CVJ|1|2a|C|747
8CVJ|1|2a|C|748
8CVJ|1|2a|C|749

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2o

30S ribosomal protein S15