IL_8CVJ_360
3D structure
- PDB id
- 8CVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CGUC*GUCUG
- Length
- 9 nucleotides
- Bulged bases
- 8CVJ|1|2a|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVJ_360 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2301
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
8CVJ|1|2a|C|1060
8CVJ|1|2a|G|1061
8CVJ|1|2a|U|1062
8CVJ|1|2a|C|1063
*
8CVJ|1|2a|G|1193
8CVJ|1|2a|U|1194
8CVJ|1|2a|C|1195
8CVJ|1|2a|U|1196
8CVJ|1|2a|G|1197
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2c
- 30S ribosomal protein S3
- Chain 2e
- 30S ribosomal protein S5
- Chain 2i
- 30S ribosomal protein S9
- Chain 2j
- 30S ribosomal protein S10
- Chain 2n
- 30S ribosomal protein S14 type Z
- Chain 2v
- MF-mRNA
- Chain 2w
- Transfer RNA; tRNA
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