IL_8CVK_083
3D structure
- PDB id
- 8CVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GCGUAGGAUAG*CC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CVK_083 not in the Motif Atlas
- Geometric match to IL_5J7L_349
- Geometric discrepancy: 0.1977
- The information below is about IL_5J7L_349
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_42626.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
8CVK|1|1A|G|2110
8CVK|1|1A|C|2111
8CVK|1|1A|G|2112
8CVK|1|1A|U|2113
8CVK|1|1A|A|2114
8CVK|1|1A|G|2115
8CVK|1|1A|G|2116
8CVK|1|1A|A|2117
8CVK|1|1A|U|2118
8CVK|1|1A|A|2119
8CVK|1|1A|G|2120
*
8CVK|1|1A|C|2178
8CVK|1|1A|C|2179
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1y
- Transfer RNA; tRNA
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