3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GCGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CVK_083 not in the Motif Atlas
Geometric match to IL_5J7L_349
Geometric discrepancy: 0.1977
The information below is about IL_5J7L_349
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_42626.2
Basepair signature
cWW-cWW
Number of instances in this motif group
14

Unit IDs

8CVK|1|1A|G|2110
8CVK|1|1A|C|2111
8CVK|1|1A|G|2112
8CVK|1|1A|U|2113
8CVK|1|1A|A|2114
8CVK|1|1A|G|2115
8CVK|1|1A|G|2116
8CVK|1|1A|A|2117
8CVK|1|1A|U|2118
8CVK|1|1A|A|2119
8CVK|1|1A|G|2120
*
8CVK|1|1A|C|2178
8CVK|1|1A|C|2179

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1y
Transfer RNA; tRNA

Coloring options:


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