IL_8CVK_185

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

8CVK|1|2A|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVK_185 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1265

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8CVK|1|2A|C|288
8CVK|1|2A|A|289
8CVK|1|2A|G|290
*
8CVK|1|2A|U|350
8CVK|1|2A|G|351
8CVK|1|2A|G|352
8CVK|1|2A|G|353

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains