3D structure

PDB id
8CVK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.5 Å

Loop

Sequence
GAUAAC*GGAAGC
Length
12 nucleotides
Bulged bases
8CVK|1|2A|A|2765
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CVK_274 not in the Motif Atlas
Geometric match to IL_7RQB_107
Geometric discrepancy: 0.0662
The information below is about IL_7RQB_107
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.5
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8CVK|1|2A|G|2737
8CVK|1|2A|A|2738
8CVK|1|2A|U|2739
8CVK|1|2A|A|2740
8CVK|1|2A|A|2741
8CVK|1|2A|C|2742
*
8CVK|1|2A|G|2762
8CVK|1|2A|G|2763
8CVK|1|2A|A|2764
8CVK|1|2A|A|2765
8CVK|1|2A|G|2766
8CVK|1|2A|C|2767

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 29
50S ribosomal protein L36
Chain 2H
50S ribosomal protein L6
Chain 2N
50S ribosomal protein L13

Coloring options:


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