IL_8CVK_300

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CVK_300 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1183

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8CVK|1|2a|G|409
8CVK|1|2a|G|410
8CVK|1|2a|A|411
8CVK|1|2a|A|412
8CVK|1|2a|G|413
8CVK|1|2a|A|414
8CVK|1|2a|A|415
8CVK|1|2a|G|416
*
8CVK|1|2a|U|427
8CVK|1|2a|G|428
8CVK|1|2a|U|429
8CVK|1|2a|A|430
8CVK|1|2a|A|431
8CVK|1|2a|A|432
8CVK|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4