3D structure

PDB id
8CVL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
UGCGAAC*GGAGGUAUA
Length
16 nucleotides
Bulged bases
8CVL|1|2A|G|1801, 8CVL|1|2A|G|1816, 8CVL|1|2A|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CVL_239 not in the Motif Atlas
Geometric match to IL_7RQB_070
Geometric discrepancy: 0.0378
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

8CVL|1|2A|U|1798
8CVL|1|2A|G|1799
8CVL|1|2A|C|1800
8CVL|1|2A|G|1801
8CVL|1|2A|A|1802
8CVL|1|2A|A|1803
8CVL|1|2A|C|1804
*
8CVL|1|2A|G|1813
8CVL|1|2A|G|1814
8CVL|1|2A|A|1815
8CVL|1|2A|G|1816
8CVL|1|2A|G|1817
8CVL|1|2A|U|1818
8CVL|1|2A|A|1819
8CVL|1|2A|U|1820
8CVL|1|2A|A|1821

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2D
50S ribosomal protein L2
Chain 2a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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