IL_8D28_001

3D structure

PDB id

8D28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of theophylline aptamer in complex with theophylline

Experimental method

X-RAY DIFFRACTION

Resolution

1.42 Å

Loop

Sequence

GAUAC*GCAGC

Length

10 nucleotides

Bulged bases

8D28|1|A|C|27

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8D28_001 not in the Motif Atlas

Geometric match to IL_8D28_003

Geometric discrepancy: 0.0574

The information below is about IL_8D28_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63519.1

Basepair signature

cWW-cWW-L-R-cSH-cWW

Number of instances in this motif group

2

Unit IDs

8D28|1|A|G|4
8D28|1|A|A|5
8D28|1|A|U|6
8D28|1|A|A|7
8D28|1|A|C|8
*
8D28|1|A|G|26
8D28|1|A|C|27
8D28|1|A|A|28
8D28|1|A|G|29
8D28|1|A|C|30

Current chains

Chain A

RNA (33-MER)

Nearby chains

Chain B

RNA (33-MER)