IL_8D2L_001

3D structure

PDB id

8D2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Acidothermus cellulolyticus Cas9 ternary complex (Cleavage Intermediate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GGA*UAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8D2L_001 not in the Motif Atlas

Geometric match to IL_4JGN_003

Geometric discrepancy: 0.3147

The information below is about IL_4JGN_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8D2L|1|B|G|30
8D2L|1|B|G|31
8D2L|1|B|A|32
*
8D2L|1|B|U|45
8D2L|1|B|A|46
8D2L|1|B|C|47

Current chains

Chain B

Single guide RNA (106-MER)

Nearby chains

Chain A

CRISPR-associated endonuclease, Csn1 family