IL_8DK7_003
3D structure
- PDB id
- 8DK7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of theophylline aptamer soaked with TAL2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.46 Å
Loop
- Sequence
- CCAG*CCCUUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8DK7_003 not in the Motif Atlas
- Geometric match to IL_8DK7_002
- Geometric discrepancy: 0.0808
- The information below is about IL_8DK7_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_33141.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
8DK7|1|F|C|8
8DK7|1|F|C|9
8DK7|1|F|A|10
8DK7|1|F|G|11
*
8DK7|1|F|C|21
8DK7|1|F|C|22
8DK7|1|F|C|23
8DK7|1|F|U|24
8DK7|1|F|U|25
8DK7|1|F|G|26
8DK7|1|F|G|27
Current chains
- Chain F
- RNA (34-MER)
Nearby chains
- Chain D
- FAB heavy chain
- Chain E
- FAB light chain
Coloring options: