IL_8DK7_004
3D structure
- PDB id
- 8DK7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of theophylline aptamer soaked with TAL2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.46 Å
Loop
- Sequence
- GAUACCAG*CCCUUGGCAGC
- Length
- 19 nucleotides
- Bulged bases
- 8DK7|1|C|C|28
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29357.1
- Basepair signature
- cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R
- Number of instances in this motif group
- 1
Unit IDs
8DK7|1|C|G|4
8DK7|1|C|A|5
8DK7|1|C|U|6
8DK7|1|C|A|7
8DK7|1|C|C|8
8DK7|1|C|C|9
8DK7|1|C|A|10
8DK7|1|C|G|11
*
8DK7|1|C|C|21
8DK7|1|C|C|22
8DK7|1|C|C|23
8DK7|1|C|U|24
8DK7|1|C|U|25
8DK7|1|C|G|26
8DK7|1|C|G|27
8DK7|1|C|C|28
8DK7|1|C|A|29
8DK7|1|C|G|30
8DK7|1|C|C|31
Current chains
- Chain C
- RNA (34-MER)
Nearby chains
- Chain A
- FAB light chain
- Chain B
- FAB heavy chain
Coloring options: