IL_8DP3_001

3D structure

PDB id

8DP3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of coxsackievirus B3 cloverleaf RNA replication element

Experimental method

X-RAY DIFFRACTION

Resolution

1.91 Å

Loop

Sequence

CUAG*CG

Length

6 nucleotides

Bulged bases

8DP3|1|R|A|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

8DP3|1|R|C|48
8DP3|1|R|U|49
8DP3|1|R|A|50
8DP3|1|R|G|51
*
8DP3|1|R|C|78
8DP3|1|R|G|79

Current chains

Chain R

RNA (90-MER)

Nearby chains