IL_8E30_012
3D structure
- PDB id
- 8E30 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound streptogramin A analog 3142
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.91 Å
Loop
- Sequence
- GGAG*UGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8E30_012 not in the Motif Atlas
- Homologous match to IL_5J7L_256
- Geometric discrepancy: 0.0651
- The information below is about IL_5J7L_256
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8E30|1|I|G|536
8E30|1|I|G|537
8E30|1|I|A|538
8E30|1|I|G|539
*
8E30|1|I|U|554
8E30|1|I|G|555
8E30|1|I|A|556
8E30|1|I|C|557
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L13
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