IL_8E32_009

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E32_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.2582

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

8E32|1|I|C|274
8E32|1|I|C|275
8E32|1|I|U|276
8E32|1|I|G|277
8E32|1|I|A|278
8E32|1|I|A|279
8E32|1|I|U|280
8E32|1|I|C|281
*
8E32|1|I|G|359
8E32|1|I|U|360
8E32|1|I|G|361
8E32|1|I|A|362
8E32|1|I|G|363

Current chains

Chain I

23S ribosomal RNA

Nearby chains