IL_8E32_012

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

8E32|1|I|A|504, 8E32|1|I|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E32_012 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0977

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8E32|1|I|G|481
8E32|1|I|A|482
8E32|1|I|A|483
8E32|1|I|C|484
*
8E32|1|I|G|496
8E32|1|I|A|497
8E32|1|I|G|498
8E32|1|I|U|499
8E32|1|I|G|500
8E32|1|I|A|501
8E32|1|I|A|502
8E32|1|I|A|503
8E32|1|I|A|504
8E32|1|I|A|505
8E32|1|I|G|506
8E32|1|I|A|507
8E32|1|I|A|508
8E32|1|I|C|509

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L22