IL_8E32_067

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

8E32|1|I|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E32_067 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0782

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8E32|1|I|C|1686
8E32|1|I|G|1687
8E32|1|I|U|1688
8E32|1|I|A|1689
8E32|1|I|A|1690
8E32|1|I|C|1691
*
8E32|1|I|G|1696
8E32|1|I|G|1697
8E32|1|I|A|1698
8E32|1|I|G|1699
8E32|1|I|A|1700
8E32|1|I|A|1701
8E32|1|I|G|1702

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2