IL_8E33_032

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E33_032 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.226

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8E33|1|I|G|875
8E33|1|I|C|876
8E33|1|I|A|877
8E33|1|I|A|878
8E33|1|I|G|879
*
8E33|1|I|C|898
8E33|1|I|A|899
8E33|1|I|A|900
8E33|1|I|C|901
8E33|1|I|C|902

Current chains

Chain I

23S ribosomal RNA

Nearby chains