IL_8E33_038
3D structure
- PDB id
- 8E33 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S ribosome bound to compound streptogramin analog SAB001
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.23 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 8E33|1|I|A|1127, 8E33|1|I|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8E33_038 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0547
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
8E33|1|I|G|1024
8E33|1|I|G|1025
8E33|1|I|G|1026
8E33|1|I|A|1027
8E33|1|I|A|1028
8E33|1|I|A|1029
8E33|1|I|C|1030
*
8E33|1|I|G|1124
8E33|1|I|G|1125
8E33|1|I|A|1126
8E33|1|I|A|1127
8E33|1|I|G|1128
8E33|1|I|A|1129
8E33|1|I|U|1130
8E33|1|I|G|1131
8E33|1|I|U|1132
8E33|1|I|A|1133
8E33|1|I|A|1134
8E33|1|I|C|1135
8E33|1|I|G|1136
8E33|1|I|G|1137
8E33|1|I|G|1138
8E33|1|I|G|1139
8E33|1|I|C|1140
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L3
- Chain O
- 50S ribosomal protein L13
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