IL_8E33_043

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

8E33|1|I|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E33_043 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.2996

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E33|1|I|G|1087
8E33|1|I|A|1088
8E33|1|I|A|1089
8E33|1|I|A|1090
8E33|1|I|G|1091
*
8E33|1|I|C|1100
8E33|1|I|U|1101
8E33|1|I|C|1102

Current chains

Chain I

23S ribosomal RNA

Nearby chains