IL_8E33_100

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

8E33|1|I|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E33_100 not in the Motif Atlas

Homologous match to IL_4WF9_098

Geometric discrepancy: 0.4288

The information below is about IL_4WF9_098

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8E33|1|I|C|2591
8E33|1|I|G|2592
*
8E33|1|I|C|2601
8E33|1|I|A|2602
8E33|1|I|G|2603

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2