IL_8E35_095

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E35_095 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1235

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8E35|1|I|C|2466
8E35|1|I|C|2467
8E35|1|I|A|2468
8E35|1|I|A|2469
8E35|1|I|G|2470
*
8E35|1|I|C|2480
8E35|1|I|G|2481
8E35|1|I|A|2482
8E35|1|I|C|2483
8E35|1|I|G|2484

Current chains

Chain I

23S ribosomal RNA

Nearby chains