IL_8E35_111

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

8E35|1|I|A|2872, 8E35|1|I|A|2873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E35_111 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.1148

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8E35|1|I|G|2843
8E35|1|I|G|2844
8E35|1|I|U|2845
8E35|1|I|G|2846
*
8E35|1|I|C|2870
8E35|1|I|U|2871
8E35|1|I|A|2872
8E35|1|I|A|2873
8E35|1|I|C|2874

Current chains

Chain I

23S ribosomal RNA

Nearby chains