IL_8E35_129

3D structure

PDB id

8E35 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound SAB002

Experimental method

ELECTRON MICROSCOPY

Resolution

2.27 Å

Loop

Sequence

AGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGC*GGAGCCGACCUUGAAAUACCACCCUUUAAUGUU

Length

86 nucleotides

Bulged bases

8E35|1|I|C|2104, 8E35|1|I|G|2116, 8E35|1|I|U|2122, 8E35|1|I|G|2125, 8E35|1|I|A|2126, 8E35|1|I|G|2128, 8E35|1|I|U|2131, 8E35|1|I|U|2132, 8E35|1|I|A|2135, 8E35|1|I|G|2140, 8E35|1|I|A|2147, 8E35|1|I|C|2160, 8E35|1|I|A|2163, 8E35|1|I|C|2164, 8E35|1|I|A|2171, 8E35|1|I|U|2172, 8E35|1|I|A|2173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8E35|1|I|A|2101
8E35|1|I|G|2102
8E35|1|I|C|2103
8E35|1|I|C|2104
8E35|1|I|U|2105
8E35|1|I|U|2106
8E35|1|I|G|2107
8E35|1|I|A|2108
8E35|1|I|U|2109
8E35|1|I|G|2110
8E35|1|I|U|2111
8E35|1|I|G|2112
8E35|1|I|U|2113
8E35|1|I|A|2114
8E35|1|I|G|2115
8E35|1|I|G|2116
8E35|1|I|A|2117
8E35|1|I|U|2118
8E35|1|I|A|2119
8E35|1|I|G|2120
8E35|1|I|G|2121
8E35|1|I|U|2122
8E35|1|I|G|2123
8E35|1|I|G|2124
8E35|1|I|G|2125
8E35|1|I|A|2126
8E35|1|I|G|2127
8E35|1|I|G|2128
8E35|1|I|C|2129
8E35|1|I|U|2130
8E35|1|I|U|2131
8E35|1|I|U|2132
8E35|1|I|G|2133
8E35|1|I|A|2134
8E35|1|I|A|2135
8E35|1|I|G|2136
8E35|1|I|U|2137
8E35|1|I|G|2138
8E35|1|I|U|2139
8E35|1|I|G|2140
8E35|1|I|G|2141
8E35|1|I|A|2142
8E35|1|I|C|2143
8E35|1|I|G|2144
8E35|1|I|C|2145
8E35|1|I|C|2146
8E35|1|I|A|2147
8E35|1|I|G|2148
8E35|1|I|U|2149
8E35|1|I|C|2150
8E35|1|I|U|2151
8E35|1|I|G|2152
8E35|1|I|C|2153
*
8E35|1|I|G|2156
8E35|1|I|G|2157
8E35|1|I|A|2158
8E35|1|I|G|2159
8E35|1|I|C|2160
8E35|1|I|C|2161
8E35|1|I|G|2162
8E35|1|I|A|2163
8E35|1|I|C|2164
8E35|1|I|C|2165
8E35|1|I|U|2166
8E35|1|I|U|2167
8E35|1|I|G|2168
8E35|1|I|A|2169
8E35|1|I|A|2170
8E35|1|I|A|2171
8E35|1|I|U|2172
8E35|1|I|A|2173
8E35|1|I|C|2174
8E35|1|I|C|2175
8E35|1|I|A|2176
8E35|1|I|C|2177
8E35|1|I|C|2178
8E35|1|I|C|2179
8E35|1|I|U|2180
8E35|1|I|U|2181
8E35|1|I|U|2182
8E35|1|I|A|2183
8E35|1|I|A|2184
8E35|1|I|U|2185
8E35|1|I|G|2186
8E35|1|I|U|2187
8E35|1|I|U|2188

Current chains

Chain I

23S ribosomal RNA

Nearby chains