IL_8E3L_006

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_006 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0946

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8E3L|1|I|G|188
8E3L|1|I|G|189
8E3L|1|I|A|190
8E3L|1|I|A|191
8E3L|1|I|C|192
8E3L|1|I|U|193
8E3L|1|I|G|194
*
8E3L|1|I|C|201
8E3L|1|I|U|202
8E3L|1|I|A|203
8E3L|1|I|A|204
8E3L|1|I|G|205
8E3L|1|I|U|206
8E3L|1|I|A|207
8E3L|1|I|C|208

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15