IL_8E3L_036

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

8E3L|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_036 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0828

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

8E3L|1|I|U|1018
8E3L|1|I|U|1019
8E3L|1|I|A|1020
8E3L|1|I|A|1021
8E3L|1|I|G|1022
8E3L|1|I|U|1023
8E3L|1|I|G|1024
*
8E3L|1|I|C|1140
8E3L|1|I|U|1141
8E3L|1|I|A|1142
8E3L|1|I|A|1143
8E3L|1|I|A|1144

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L13