IL_8E3L_063

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_063 not in the Motif Atlas

Geometric match to IL_4WF9_064

Geometric discrepancy: 0.1009

The information below is about IL_4WF9_064

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8E3L|1|I|G|1666
8E3L|1|I|G|1667
8E3L|1|I|A|1668
8E3L|1|I|A|1669
*
8E3L|1|I|U|1993
8E3L|1|I|C|1994

Current chains

Chain I

50S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3