IL_8E3L_066

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8E3L|1|I|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_066 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1591

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8E3L|1|I|U|1712
8E3L|1|I|A|1713
8E3L|1|I|U|1714
8E3L|1|I|G|1715
8E3L|1|I|U|1716
8E3L|1|I|A|1717
8E3L|1|I|G|1718
*
8E3L|1|I|U|1742
8E3L|1|I|G|1743
8E3L|1|I|A|1744
8E3L|1|I|A|1745
8E3L|1|I|A|1746

Current chains

Chain I

50S ribosomal RNA

Nearby chains