IL_8E3L_086

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_086 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.1207

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

8E3L|1|I|C|2350
8E3L|1|I|G|2351
8E3L|1|I|A|2352
8E3L|1|I|G|2353
*
8E3L|1|I|C|2364
8E3L|1|I|G|2365
8E3L|1|I|A|2366
8E3L|1|I|G|2367

Current chains

Chain I

50S ribosomal RNA

Nearby chains