IL_8E3L_114

3D structure

PDB id

8E3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to D-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8E3L|1|I|U|846, 8E3L|1|I|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8E3L_114 not in the Motif Atlas

Homologous match to IL_5J7L_399

Geometric discrepancy: 0.4339

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8E3L|1|I|A|844
8E3L|1|I|A|845
8E3L|1|I|U|846
8E3L|1|I|U|847
8E3L|1|I|C|848
*
8E3L|1|I|G|930
8E3L|1|I|U|931
8E3L|1|I|U|932
8E3L|1|I|A|933
8E3L|1|I|U|934

Current chains

Chain I

50S ribosomal RNA

Nearby chains